Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs76985750 | chr17:27167531 | G/C | 1.62E-5 | 175 | 15.43 | 16.03 | 3.67 | KM Plot |
| PAAD | rs76989168 | chr7:102771843 | C/T | 6.7E-8 | 178 | 16.17 | 12.2 | 3.43 | KM Plot |
| PAAD | rs77000181 | chr2:181608415 | T/C | 6.11E-5 | 174 | 15.55 | 16.6 | 4.68 | KM Plot |
| PAAD | rs7701254 | chr5:172100082 | A/G | 7.62E-5 | 176 | 15.37 | 16.03 | 3.9 | KM Plot |
| PAAD | rs7701674 | chr5:172100235 | C/T | 7.62E-5 | 176 | 15.37 | 16.03 | 3.9 | KM Plot |
| PAAD | rs7701693 | chr5:172100324 | A/T | 7.62E-5 | 176 | 15.37 | 16.03 | 3.9 | KM Plot |
| PAAD | rs77029657 | chr11:125604795 | G/A | 7.44E-5 | 177 | 15.62 | 14.9 | 3.9 | KM Plot |
| PAAD | rs77032016 | chr11:68501033 | C/A | 1.31E-9 | 176 | 15.55 | 14.37 | 2.2 | KM Plot |
| PAAD | rs77055855 | chr17:55339957 | AAAC/A | 2.6E-6 | 172 | 15.27 | 17.45 | 3.43 | KM Plot |
| PAAD | rs77060408 | chr2:70479950 | A/T | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs77067320 | chr17:55335259 | C/G | 2.32E-6 | 173 | 15.3 | 17.45 | 3.43 | KM Plot |
| PAAD | rs77071507 | chr1:227407469 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs77082794 | chr2:128602685 | C/T | 7.86E-10 | 178 | 15.72 | 12.5 | 2.2 | KM Plot |
| PAAD | rs77093136 | chr2:70412799 | C/T | 0 | 176 | 15.4 | 18.43 | 1.03 | KM Plot |
| PAAD | rs77116170 | chr1:227577717 | C/A | 6.96E-5 | 176 | 15.4 | 16.45 | 3.9 | KM Plot |